Autosampler Vial Compatibility Guide – Waters, Agilent, Shimadzu, Thermo | Chrom Tech

Quick Answer

Most modern LC, UHPLC, and GC autosamplers from manufacturers such as Waters, Agilent, Shimadzu, Thermo Scientific, and CTC use the standard 12 × 32 mm autosampler vial. The most common configuration is a 2 mL screw-thread vial with a 9 mm (10-425) cap. However, correct vial selection still depends on instrument tray design, sample volume, insert requirements, and closure compatibility.

Understanding Autosampler Vial Compatibility

Laboratories often need a reliable reference for selecting the correct autosampler vials across multiple instrument brands. Choosing the wrong vial can lead to inconsistent injections, sample loss, or instrument downtime. Even though many chromatography systems use similar vial formats, subtle differences in tray design, needle depth, and cap style can affect performance.

At Chrom Tech, we have supported chromatography laboratories since 1983 and specialize in autosampler vials, inserts, and closures for LC, UHPLC, and GC systems. Drawing on decades of real-world experience, we’ve compiled a comprehensive autosampler vial compatibility guide that spans major instrument manufacturers.

This guide helps laboratories quickly identify the correct vial format, closure style, and insert configuration for their instruments—improving reproducibility while minimizing operational issues.

Instrument Compatibility Matrix — Agilent Click ✓ to jump to recommended SKUs
Manufacturer Model / Autosampler Crimp 11mm Narrow Crimp 11mm Wide Snap 11mm Wide Screw 8-425 Screw 9mm HS 20mm 10 mL HS 20mm 20 mL HS 18mm Thrd 10 (Mag) HS 18mm Thrd 20 (Mag)
Agilent 1090, 1100, 1200
Agilent 1260, 1290 Infinity
Agilent 5880, 5890, 6850 (27 Position Tray), 6890
Agilent 6850 (22 Pos. Tray)
Agilent 7673A, 7683A
Agilent 7693A
Agilent 7985A
Agilent CTC Combi PAL
Agilent CTC GC PAL
Agilent HTC PAL
Agilent 7694, 7694E
Agilent 7697A
Agilent 8697
Agilent G1888A
Instrument Compatibility Matrix — Other Manufacturers Click ✓ to jump to recommended SKUs
Manufacturer Model / Autosampler Crimp 11mm Narrow Crimp 11mm Wide Snap 11mm Wide Screw 8-425 Screw 9mm HS 20mm 10 mL HS 20mm 20 mL HS 18mm Thrd 10 (Mag) HS 18mm Thrd 20 (Mag)
CTC A200 LC
CTC A200S
CTC Combi-xt (L-mode), GC-xt Headspace, PAL HPLC-Systems, HTS-xt, HTX-xt, PAL
CTC Combi-xt Headspace, Combi-xt SPME Option
CTC HS 500
Shimadzu AOC-14/1400
Shimadzu AOC-17
Shimadzu SIL-20A, SIL-20AC, SIL-20AXR, SIL-20ACXR (Prominence)
Shimadzu SIL-30AC
Thermo Vanquish (VH-A10-A, VF-A10-A, VC-A10-A, VH-A20-A, VF-A20-A, VH-A30-A, VF-A30-A, VN-A10-A)
Thermo WPS-3000RS / TRS / TXRS / TBRS / SL / TBSL / PL / FC
Thermo AS-AP, AS-HV, AS-50, AS-40
Thermo TriPlus RSH SMART
Thermo TriPlus RSH
Thermo TriPlus 500 HS
Thermo TriPlus 100 LS
Waters ACQUITY
Waters ALLIANCE
Vial Formats & Recommended In-Stock SKUs Click ✓ in compatibility tables to jump here

Each column is a vial family. The compatibility matrix highlights the matching column so customers can quickly identify the recommended SKUs.

Vial Family Crimp 11mm Narrow Crimp 11mm Wide Snap 11mm Wide Screw 8-425 Screw 9mm HS 20mm 10 mL HS 20mm 20 mL HS 18mm Thrd 10 (Mag) HS 18mm Thrd 20 (Mag)
Vial Dimension (mm) 12×32 12×32 12×32 12×32 12×32 23×46 23×75 23×46 23×75
Volume (mL) 2 2 2 2 2 10 20 10 20
Neck Finish 11mm 11mm 11mm 8-425 9mm 20mm 20mm 18mm Thread 18mm Thread
Comment Narrow Mouth Wide Mouth Wide Mouth Narrow Mouth Wide Mouth Magnetic Magnetic
Clear Vial CTV-1100M CTV-1104 CTV-1108 408213 CTV-1209 CTV-2246 CTV-2375 CTV-2346T CTV-2375T
Clear Vial w/MS CTV-1100GS CTV-1104GS CTV-1108GS CTV-1208GS CTV-1209GS
Amber Vial CTV-1100A CTV-1104A CTV-1108A 404810 CTV-1209A CTV-2375A CTV-2346AT CTV-2375AT
Amber Vial w/MS CTV-1100GSA CTV-1104GSA CTV-1108GSA CTV-1208MSA CTV-1209GSA
Low Volume Flat Bottom Insert 1062 405342 405342 1062 405342
Low Volume Tapered Bottom Insert 200238 CTI-9525 CTI-9525 200238 CTI-9525
Closure (PTFE/Silicone Septa with closure) CTC-1109 CTC-1109 CTC-1305 CTC-1254 CTC-0952 408077 408077 CTC-1852M CTC-1852M
Closure (PTFE/Silicone Septa with slit with closure) CTC-1109B-SLIT CTC-1109B-SLIT CTC-1370 CTC-0955

Why Autosampler Compatibility Matters

Autosamplers rely on precise mechanical alignment between the injection needle, vial, and tray. If the vial format does not match the system design, laboratories may experience issues such as:

  • Inconsistent injection volumes due to incorrect vial height
  • Needle damage or septa coring caused by incompatible caps
  • Sample evaporation or contamination from improper sealing
  • Autosampler errors or missed injections due to tray incompatibility

Using the correct vial, cap, and insert combination ensures consistent needle penetration, reliable sealing, and repeatable injections across analytical runs.

Standard Chromatography Vial
  • Vial Size: 12 × 32 mm
  • Typical Capacity: 2.0 mL (≈1.5 mL working volume)
  • Common Closure: 9 mm screw thread (10-425)
  • Materials: Type 1 borosilicate glass (clear or amber)

Major Autosampler Manufacturers

Most leading chromatography instrument manufacturers use the standard 12 × 32 mm vial format, but differences in autosampler design can influence closure type, insert choice, and vial tolerance. The most common instrument platforms include:

  • Waters autosamplers used in HPLC and UPLC systems
  • Agilent autosamplers used in InfinityLab LC and GC systems
  • Shimadzu autosamplers used in LC and UHPLC platforms
  • Thermo Scientific autosamplers used in Vanquish and Dionex systems
  • CTC PAL autosamplers commonly integrated with LC, GC, and GC/MS platforms

While these systems typically accept the same vial dimensions, laboratories should confirm closure type, insert compatibility, and tray format to ensure optimal performance.


Autosampler Vial Selection Best Practices

Selecting the right vial configuration involves more than simply choosing the correct size. Laboratories should consider several factors when selecting autosampler consumables:

  • Instrument Compatibility – Confirm vial height and cap type match the autosampler tray design.
  • Sample Volume – Use inserts or limited-volume vials when working with small sample quantities.
  • Closure Type – Choose screw, crimp, or snap closures based on system compatibility and sealing requirements.
  • Material Selection – Borosilicate glass offers maximum inertness, while amber vials protect light-sensitive samples.

Following these guidelines helps ensure consistent injections, reliable sealing, and stable sample storage across analytical workflows.


Using Inserts for Low-Volume Samples

When working with limited sample volumes, vial inserts can improve injection precision and reduce sample loss. These inserts fit inside standard autosampler vials and allow needles to reach smaller sample quantities without requiring larger injection volumes.

Common insert designs include:

  • Conical inserts for maximum sample recovery
  • Flat-bottom inserts for economical routine analysis
  • Polymer inserts for specialized chemical compatibility

Selecting the correct insert helps laboratories maintain analytical accuracy when sample quantities are limited.


Chrom Tech Autosampler Vial Compatibility Chart

To help laboratories quickly identify compatible consumables, Chrom Tech has compiled a detailed autosampler compatibility chart covering major chromatography instrument manufacturers. This reference includes guidance on:

  • Compatible vial dimensions
  • Thread and closure types
  • Insert compatibility
  • Best practices for reliable injections

By referencing this compatibility chart, laboratories can confidently select the correct vial configurations for their systems while minimizing injection variability and instrument downtime.


Explore Brand-Specific Compatibility Guides

For more detailed compatibility information, laboratories can explore Chrom Tech’s instrument-specific guides for major autosampler platforms.

These resources provide additional guidance on vial types, closure compatibility, and best practices for individual instrument platforms.


Conclusion

Selecting the correct autosampler vial is essential for maintaining reliable chromatography workflows. Even though most LC, UHPLC, and GC systems use a standard vial format, factors such as closure type, insert compatibility, and tray design can influence performance.

Chrom Tech’s autosampler compatibility resources help laboratories identify the correct vial configurations for their instruments—ensuring consistent injections, reduced downtime, and reproducible analytical results.

To explore compatible vial options and laboratory consumables, visit the Chrom Tech Autosampler Vials Resource Center.

Frequently Asked Questions

What size autosampler vial do most chromatography systems use?

Most modern LC, UHPLC, and GC autosamplers use a standard 12 × 32 mm vial with a 2 mL capacity and approximately 1.5 mL working volume.

Are autosampler vials interchangeable between instrument brands?

In many cases yes, since most instruments use the same 12 × 32 mm vial size. However, closure type, insert design, and tray compatibility should always be verified.

When should vial inserts be used?

Vial inserts are recommended when working with small sample volumes or trace analysis. They help concentrate the sample at the bottom of the vial for improved needle access and injection precision.